Showing posts with label statistics. Show all posts
Showing posts with label statistics. Show all posts

Wednesday, February 25, 2026

Can't stop blogging about book reviews!

My last post commented further about book reviews in the physics community.  An announcement today that the Mathematical Association of America (MAA) has appointed a new editor for its MAA Reviews has reminded me that the mathematical community is doing relatively better on the book review front than the physics community is.  I don't read MAA Reviews regularly, but I see that it is a professional-society sponsored source of curated book reviews.  They also feature a Basic Library List, a downloadable spreadsheet which includes books they recommend for college and university libraries.  The list is annotated with a star system, with 3 stars for books considered essential, 2 stars for strongly recommended, 1 star for "recommended", and zero stars for "suggested".  I haven't examined the list in detail, but conceptually this seems to be a good idea, and quite useful for students and self-learners as well.

More broadly, I can't speak to the quality of MAA Reviews, as I'm not a regular reader, but the concept seems like exactly what I think is missing in the physics community.  As a bonus, all the content seems to be freely available online.  Unfortunately, using the search feature I was able to find only a single reviewed book in the field of fluid mechanics, and only 3 under physics.  Its coverage of statistics is not at all comprehensive, with only 6 books showing up in the search feature for statistics, 6 more for probability, with 3 more under probability theory, two under "Statistics and Probability", one more under Bayesian statistics, one each under classification and clustering, one more under data visualization, and one more under data analysis.

The Basic Library List has much better coverage, but no reviews are attached to the entries.  Looking at the fluid mechanics sections of the list, I count only 13 titles included, of which only two are rated at 3 stars (essential), both by James Lighthill:  his Waves in Fluids and Informal Introduction to Theoretical Fluid Mechanics.  Both are excellent choices that I would agree with.  There are no 2 star recommendations, but earning a single star are Acheson's Elementary Fluid Mechanics, Lamb's Hydrodynamics, Courant and Friedrichs' Supersonic Flow and Shock Waves, Stoker's Water Waves, and a book I'd not heard of until now, Gary Sod's Numerical Methods in Fluid Dynamics.  Aside from that last one, I would consider the rest as classics.  A 14th book, Batchelor's Introduction to Fluid Dynamics, also a classic, appears under "Mathematical Physics:  Fluid Mechanics".  However there are quite a few other classics that should have been included, many of which were written by physicists or engineers.  So, in execution the list might not live up to my expectations, but I suppose opinions about books are always subjective, so that no such list would make everyone happy.

In addition to MAA, I am a member of SIAM (the Society for Industrial and Applied Mathematics), and their SIAM Review (a journal sent to all members) maintains a healthy book review section.

Anyway, perhaps the physics community needs a source of free, online, curated book reviews in the spirit of MAA Reviews, to replace the fallen books section of Physics Today.  A professional society might be a good central place to host one.

 

 

 

 

 

 

 

Sunday, January 29, 2023

Take probability models seriously, but not literally

Last week's Science had a feature article about several nurses who were convicted of murder in Europe based on statistical arguments regarding the number of babies who died under their care.  Some of these arguments appear to have been decisively debunked by statisticians not originally involved in the cases.  There is a sidebar article by the same author (Cathleen O'Grady) on mothers who were tried for the murders of their own children, again based on questionable statistical arguments.

These episodes are striking, given that I am currently reading a book by physicist Erica Thompson, Escape from Model Land:  How Mathematical Models Can Lead Us Astray and What We Can Do About It (Basic Books, 2022).  She argues that mathematical models always make simplifications and assumptions that divorce them from the real world; and while the modeling exercise may be of great instructive value, one must often be very careful not to claim that the model output represents reality.  In other words, once you step into "model land", and do your modeling exercise, you must not forget to step back out into the real world, and not mistake model land for reality.  The way I would put it is that models deserve to be taken seriously, but not literally.  In the case of the shoddy statistics that put innocent nurses and mothers in prison, those analyses should not be taken either seriously nor literally. 


Monday, June 28, 2021

The proton radius puzzle and the hazards of combining data from multiple studies

If journalism is a first draft of history, Physics World writer Edwin Cartlidge has done a superb job this month of reporting on the "Proton Radius Puzzle" and the pitfalls of combining data from multiple studies.  Cartlidge's piece is also a superb case study of a phenomenon described by David Bailey a few years ago.

Over time, a number of experiments around the world, using different physical principles, attempted to measure the radius of the proton.  An international group, CODATA, has the task of compiling all such data and basically reporting the community's best estimate.  This is done by first voting on which studies should be included; then the data are simply (weighted) averaged; presumably the weights are determined by the error bars reported by the individual studies.  The thus combined estimate, it is hoped, will have a more accurate point estimate, and narrow error bars, than any of the individual findings.  The former chair of the CODATA group working on the proton radius is quoted in Cartlidge's article arguing that this process incorporates all "individually credible results" but passes no judgment on whether each of those results is "right or wrong", a task that "would require superhuman powers".

Well, for about eight years, the measurement by the CREMA experiment, using a unique muon-based principle, was excluded from the average, as it was an outlier compared to other reports (in exactly the sense that Bailey has described).  However, in the interim, other groups using the more conventional approaches started to obtain results comparable to the lower value given by CREMA.  In 2018 CODATA finally incorporated the outlying results, though the stated error bars for the combined estimate had increased, unsurprisingly.  See Cartlidge's article for the twists and turns of the story.

DTLR's interest here is in the whole concept of combining data.  Something like this is widely practiced in statistics, under the name "meta-analysis".  I consider this poor practice, because it sweeps under the rug potential systematic errors in the individual results.  In the proton radius case, Cartlidge even seems to suggest that groupthink might have been at play in the CODATA decisions.

Here is DTLR's opinion about combinging data from multiple studies.  Don't do it.  Instead of meta-analysis, the individual study results, with their error bars, should simply be displayed together.  Users should be directed to critically review the study design, execution, analysis, and reporting of the individual studies, seeking out differences among them.  Authors of systematic reviews should use their judgment and discuss the similarities and differences, without blindly pooling all the data together.  Cartlidge writes, "the CREMA result was not really at odds with individual spectroscopy experiments – all but one differed by no more than 1.5 standard deviations, or σ. The only significant disparity – of at least 5 σ – arose when the conventional data were averaged and the error bars shrunk. But that disparity could only be maintained if the muon result itself was kept out of the fitting process – given how much it would otherwise shift the CODATA average towards itself."  My interpretation is that the artificial task of combining the data drove the source of confusion; this would have been avoided by simply presenting all the individual study results separately.  The field has clearly not reached sufficient maturity for a combined "best" estimate to be meaningful, in my opinion, and this is probably even more true of the meta-analyses often reported in the medical and public health literature.

Just days after Cartlidge's article came out, another one authored by him was published that also has combining data at its heart.  This one was about gravitational waves, but the story is complicated even further by the waveform modeling required to interpret gravitaitional wave signals.


Tuesday, September 3, 2019

The New Yorker weighs in on statistics

Hannah Fry writes in the New Yorker this month about the benefits and pitfalls of statistics.  Highly recommended.

Saturday, February 17, 2018

Three Sigma results in particle physics and astronomy

Also in the same issue of Science there was a news article by Adrian Cho on experimental attempts to measure the muon's magnetic moment.  Evidently there was a hint of physics beyond the standard model in earlier measurements, reaching a statistical discrepancy of 3.5 sigma, not quite at the conventional 5 sigma threshold for discovery.  At the end of the article, theoretical physicist JoAnne Hewitt of SLAC is quoted as saying "In my physics lifetime, every 3-sigma deviation from the standard model has gone away.  If it weren't for that baggage, I'd be cautiously optimistic."

This brought to mind a piece nearly 20 years ago, also in Science, by Charles Seife, "CERN's gamble shows perils, rewards of playing the odds."  It discusses several examples of highly statistically significant findings that "crumbled into dust" due to the discovery of systematic errors.  The late John Bahcall is quoted as saying "Half of all three-sigma results are wrong.  Look at the history."  He goes on to say "It's the systematic errors that kill you."

Seife adds,
Discoveries that seem statistically unassailable can vanish overnight, while flimsier looking findings have entered the award rosters and the textbooks without cavil.  Qualitative factors, such as the reputation of a team of scientists, whether a finding conforms to prevailing theory, and how and why the team announces a discovery, can determine whether it wins the Nobel Prize or languishes as an also-ran.

Seife's piece is a good one, worth reading and saving.

Monday, January 15, 2018

A physicist attends JMM

The Joint Mathematics Meetings (JMM) are advertised as the world's largest mathematics conference. This year's meeting was held in San Diego, CA, last week. DTLR attended despite his mild allergy to pure mathematics. This was my first time attending JMM, and I chose the sessions I attended with great care, and learned a lot. Some highlights are discussed below.
San Diego Convention Center, site of JMM 2018.

Physics


The best talk given by a mathematician was a physics talk, “Toy models,” by Stanford professor Tadashi Tokieda. He used a series of toys exhibiting unexpected, puzzling, and surprising behavior to illustrate ideas in physics, using almost no mathematics at all. Rather, he relied on qualitative reasoning and dimensional analysis rather than direct computation. After I returned home I discovered that many of his examples, and others, can be found in his Youtube videos, some of which are collected here. He was an exceedingly entertaining speaker – I was not bored for even one second. I would rate this as the best talk of the conference.

Computer scientist Dana Randall (Georgia Tech) gave a presentation on statistical physics, “Emergent phenomena in random structures and algorithms.” She discussed phase transitions in lattice gases, randomized algorithms, and swarm robotics, among other topics. (Phase transitions were also one of the topics addressed by Tokieda.)

Fluid Dynamics


Edriss S. Titi (Texas A&M and Weizmann Institute) provided a review of mathematical results on existence, uniqueness, and regularity of solutions for the incompressible Euler and Navier-Stokes equations under various conditions, such as 2D vs. 3D flows, and types of initial conditions. This is of course the subject of one of the million dollar prizes offered by the Clay Mathematics Institute. Rayleigh-Benard convection was given as an example. 

Isabelle Gallagher (University of Paris Diderot) presented a review of mathematical results connecting the Newton hard-sphere gas model to the Boltzmann transport equation from the kinetic theory of gases, and to the Navier-Stokes equations for a continuum fluid. One of the puzzles is how does a fundamentally reversible system – Newton's laws applied to a gas of hard spheres – result in irreversible behavior characterized by the second law of thermodynamics (reflected in both the Boltzmann and Navier-Stokes models). Her answer to this is the Ehrenfest experiment, where such a gas begins in one chamber, and at a certain time the portal to a second chamber is opened. Eventually an equilibrium is reached where both chambers have approximately the same number of particles. The key is the number of particles. If there are just two particles, nothing remarkable is observed. However, when there are many particles, the most likely states of the system are those near the equilibrium state. Thus, the statistical properties of a completely deterministic system are consistent with the second law of thermodynamics. We might think of this as an emergent behavior, not unlike those discussed in Dana Randall's talk.

Data Analysis


Topologist Gunnar Carlson (Stanford) discussed “Topological Modeling of Complex Data”. Here the “model” is not a statistical model, but rather a network model that attempts to capture the shape of data. The idea is to apply overlapping bins to the data along some of the predictor variables, and cluster the data along these axes into nodes. Nodes with overlapping data are connected, forming a network graph.

Applied mathematician Tamara G. Kolda (Sandia National Labs) spoke about tensor decompositions, particularly a decomposition known as CP (canonical polyadic). These tensor decompositions are not  orthogonal, but the idea is to essentially project high dimensional data onto what I will call basis tensors. Randomization plays a key role in the algorithm.

Neither of these presentations is by a statistician, and neither addresses statistical inference, rightly so in my view. Rather, they belong to exploratory data analysis (EDA), a field that Carlson reminds us was invented by (topologist) John Tukey.

Computer Science


Harvard computer scientist Cynthia Dwork (joint appointment with Microsoft) presented a talk on differential privacy. Algorithms that exhibit differential privacy are randomized algorithms that respond to a query to a data base, and provide the following guarantee. A specific person's decision to be included (or not) in the data base should not affect the outputs of the algorithm. Let two data sets differ by a single individual's record (she is present in one data set, and a different randomly sampled person from the population replaces her in the second). Any outcome output from the algorithm run on either data set will be almost equally likely. Algorithms with the differential privacy property are also inherently robust in the statistical sense, and can be used for adaptive/exploratory reuse of the data for statistical modeling.

A theme is evident: the talks by Randall, Kolda, and Dwork all involve randomized algorithms in computer science, not a topic that I thought about when I was a student 20 or so years ago.

What about Math?


I did attempt to attend some actual pure math talks: Alissa Crans (Loyola Marymount University) on “Quintessential quandle queries” and Craig Huneke (Virginia) on “How complicated are polynomials in many variables”. I had not heard of quandles before; the speaker related them to both groups and knots. An application to cryptography was mentioned but not dwelled on. She did at least bring a prop (a giant tetrahedron) that she used for illustration. No applications were mentioned at all in the polynomial talk, which focused on something called Stillman's conjecture. I also attended a talk by a distinguished historian of mathematics, Joseph Dauben (CUNY), on the history of Chinese math (actually, the history of Chinese historians of mathematics).

A slide from Alissa Crans' lecture on quandles, showing the definition and the mathematician who coined the term.

I also attended a panel session on careers in business, industry, and government, which probably could have run longer than it did. I was pleased to see a high level of interest in this session, but sad that many math students aren't sure how or even whether to pursue such careers. It's a good thing that they came to this session, but their home departments should be doing more to stimulate interest and provide practical resources for such career development. There was also a talk by applied mathematician Stephen Hobbs (Space and Naval Warfare Systems Center) on a simple model for deploying aircraft-carrier based resources in a humanitarian aid scenario. Finally I attended a few sessions on statistical education, including one on developing a data science program within a mathematics department.

The exhibit hall was a delight, with many book and software vendors offering their wares.  The National Security Agency had a recruiting booth which featured an original Enigma encryption device, which attendees were invited to interact with (unlike museum pieces that remain behind glass).
An original ENIGMA device at the NSA booth.


Of course, San Diego is a nice spot to go in the winter, with many extracurricular delights.
Beef empanadas at a Spanish restaurant, Cafe Sevilla, in the Gaslamp District of San Diego.

Saturday, October 15, 2016

Book review: Calculated Risks, by Gerd Gigerenzer

Gigerenzer (2003) addresses statistical thinking, and the lack thereof, in medical and legal contexts, focusing on handling probabilities (risks). He identifies several issues and correctives:
  • The illusion of certainty. For instance, most patients are not told that diagnostic medical tests can make mistakes, and are not informed of the error rates (false positive and false negatives).
  • Ignorance of risk. Even if uncertainty is acknowledged, laymen and experts often do not know how great the level of risk is.
  • Miscommunication of risk. Because of the peculiarities of human psychology, the way that risk information is usually communicated (using probabilities expressed as frequencies) can be misleading. For instance, absolute risk reduction, relative risk reduction, and number needed to treat are all mathematically equivalent ways to express the efficacy of a treatment. However, relative risk reduction is usually the way to communicate the results that leaves the best impression on the untutored mind.
  • Clouded thinking. Even when risks are communicated properly, both experts and laypeople may not know how to reason with them. Expressing probabilities as natural frequencies forces us to focus on the reference class, and it allows people with little training to carry out Bayes Rule calculations easily.
The book provides a number of interesting case studies: the cases of breast cancer screening and AIDS counseling are particularly dramatic, and should be required reading for anyone taking a diagnostic medical test. Several other decision making heuristics that can result in misleading results are discussed, such as the "category effect". In general though, the book is not a complete discussion of the psychology of judgment and decision making applied to statistical thinking. Nonetheless, the author identifies a number of sub-optimal medical and legal practices in every day life.

Reference


Gerd Gigerenzer, 2003: Calculated Risks: How to Know When the Numbers Deceive You. Simon & Schuster.

Sunday, August 14, 2016

Book Review: Stephen Stigler's "The Seven Pillars of Statistical Wisdom"



The Seven Pillars of Statistical Wisdom, by Stephen M. Stigler (Harvard University Press, Cambridge, Mass., 2016).

The book presents seven principles that the author believes support the core of statistics as a unified science of data, “the original and still preeminent data science” (p. 195).  It is intended for both professional statisticians and the “interested layperson,” though I suspect the latter would struggle a bit, as the author does not shy from formulae, calculations, and even name-drops of advanced statistical methods and concepts.  The author is a distinguished professor of statistics at the University of Chicago, and a leading historian of the field.  Each of the seven main chapters discusses one of the “pillars,” illustrated with historical examples (as opposed to contemporary ones) and often accompanied by discussions of the pitfalls involved with each principle.  The author states that “I will try to convince you that each of these was revolutionary when introduced, and each remains a deep and important conceptual advance” (p. 2).

The first principle is titled “Aggregation” or “the combination of observations,” of which the arithmetic mean is the chief example discussed.  The author implies that the method of least squares, and more general smoothing methods, also falls under aggregation, broadly understood.  The concept of aggregation is radical because the principle implies that individual observations can be discarded in favor of sufficient statistics.  Prior to a general acceptance of averages, scientists would often simply choose the “best” of a set of observations, or perhaps take a midrange (average of the highest and lowest values).  The concept offers other dangers, as the author illustrates with Quetelet’s notion of the Average Man.

The second principle is titled “Information:  its measurement and rate of change”, which focuses on the Central Limit Theorem and the root-N law (which roughly states that the gain in precision of an estimate increases with only the square root of the amount of data used to calculate it).  The author acknowledges the contrast of statisticians’ usage of the term “Information” (specifically, Fisher Information) with its more general use in signal processing and information theory (specifically, Shannon information).  Again, pitfalls are discussed, including a case where randomly selecting one of two data points is better than using their average.  This is a case where cannonballs of two calibers are reported by different spies.  A cannon whose caliber equals their average would not exist.  “The measurement of information clearly required attention to the goal of the investigation” (p. 59).  (In my view, one could write an entire chapter on that last point, and it would be more important than most of the 7 principles selected by the author for this book.)

The third principle is titled “Likelihood:  Calibration on a Probability Scale”.  Here the concept of a statistical significance test is introduced, along with p-values, Bayesian induction, and the theory of maximum likelihood.  The fourth principle is titled “Intercomparison:  within-sample variation as the standard.”  He illustrates it with Student’s distribution and t-test, and the analysis of variance.  Pitfalls are illustrated with an example of data dredging in the hands of economist William Stanley Jevons.  The author acknowledges further pitfalls, “for the lack of appeal to an outside standard can remove our conclusions from all relevance” (p. 198). (In my view this concern is understated:  statisticians are fond of standardizing data, but this prevents multiple data sets from being compared using an external standard.  Dimensional analysis offers an alternate approach.)

The fifth principle is titled “Regression:  Multivariate Analysis, Bayesian Inference, and Causal Inference”.  This principle warrants the longest chapter of the book, and begins by focusing on regression to the mean, a discovery made by Francis Galton.  This discovery resolved a paradox Galton had noticed in Darwin’s theory of evolution:  if each generation produced heritable variation of traits to its offspring, why was the aggregate variation in those traits stable over time?  Later in the chapter, Stein’s paradox is discussed, and shrinkage estimation is presented as a version of regression.  The correlation-causation fallacy is also discussed, including spurious correlation and Austin Bradford Hill’s principles for epidemiological inference.  The chapter also covers multivariate analysis, Bayesian statistics, and path analysis-- a real hodge podge.

The sixth principle is “Design:  Experimental Planning and the Role of Randomization”.  Fisher’s demolishment of one-factor-at-a-time experimentation is discussed, as is Pierce’s innovation of using randomization in experimental psychology studies, and later Neyman’s discussion of random sampling in social science.  The chapter ends with a brief discussion of clinical trials and a lengthier discussion of the French lottery of the 18th and 19th centuries.

The seventh principle is titled “Residual”, by which the author means both residual analysis, a commonly used approach for statistical model criticism, as well as formal model comparison for nested models, using a significance test.  The author also detours into the history of data graphics.  The chapter is marred by infelicities in its history of physics and astronomy.  At one point the author states that “We are still looking for that [lumineferous] aether” (p. 172).  Rest assured, most physicists are not worried about that.  The author then describes Laplace’s approach to resolving an apparent discrepancy in the orbits of Jupiter and Saturn; Laplace was able to show that the motions could be explained using a mutual 3-body problem with the sun.  Using an exaggeration worthy of our current Presidential candidates, the author observes that “A residual analysis had saved the solar system.”  Finally, in the Conclusion, the author speculates about the possibility of an (as yet unknown) eighth pillar to accommodate the era of big data.

At this point, readers should be warned that I have an unconventional and dissident view of statistical ideology.  For instance, where the author states about statistical significance tests, “misleading uses have been paraded as if they were evidence to damn the entire enterprise rather than the particular use” (p. 197), I would number myself among those who would damn the entire enterprise.  (This is a topic of current controversy, as evidenced by Wasserstein, 2016.)  There is some value in distilling the ideas of statistics into a set of principles; similar exercises are commonly embarked on, and Kass et. al (2016) is another example published in the same year.  Were I to write such an account, it would differ from both Stigler’s and others’, and present my own statistical ideology.  This will have to wait for another day.  Suffice it to say that my selection of pillars would differ, and any discussion I'd offer of Stigler's would dwell far more on the pitfalls and hazards than he has.

In my view, this book’s chapter on “Design” is the best (except for the digression on the French lottery), while the topics discussed in the other chapters are so fraught with difficulties that the concepts described might be as potentially harmful as they are helpful to the serious data analyst.  I found the book disappointing and less enlightening than I had hoped. While not as bad as Salsburg's The Lady Tasting Tea, I would find it difficult to recommend this book to readers of any level of statistical sophistication.


References


Kass, R.E., et al., 2016:  Ten simple rules for effective statistical practice.  PLoS Computational Biology, vol. 12 (6), e1004961.

Wasserstein, R. L. (ed.), 2016:  ASA statement on statistical significance and P-values.  The American Statistician, vol. 70, pp. 129-133.